License unknown
Tool
matscipy tool
Analyze atomistic configurations, defects, strain and fracture-related material behavior.
Added Change observed by
GitHub · libAtoms/matscipyStars 246Forks 70
Materials engineering
AIPOCH Network
Reusable capabilities
Tools, methods, and workflows to bring into your own research.
227 entries · Capabilities
License unknown
Tool
MDAnalysis tool
Analyze molecular dynamics trajectories, including alignment, distances, contacts and structural changes.
Added Change observed by
GitHub · MDAnalysis/mdanalysisStars 1.7KForks 862
Chemical sciences
License unknown
Tool
MDTraj tool
Analyze and convert molecular trajectories, including RMSD, solvent-accessible surface area and hydrogen bonds.
Added Change observed by
GitHub · mdtraj/mdtrajStars 735Forks 298
Chemical sciences
License unknown
Tool
MedCAT clinical text processing
Develop clinical text processing workflows with the CogStack NLP collection; this catalog entry focuses on the MedCAT concept extraction and linking component.
Added Change observed by
GitHub · CogStack/cogstack-nlpStars 80Forks 15
Clinical medicine
License unknown
Tool
medfate tool
Simulate forest water balance, plant hydraulics, carbon balance and growth.
Added Change observed by
GitHub · emf-creaf/medfateStars 14Forks 8
Agriculture, forestry, and fisheries
License unknown
Tool
Meep tool
Simulate electromagnetic fields, fluxes and spectra with the finite-difference time-domain method.
Added Change observed by
GitHub · NanoComp/meepStars 1.8KForks 809
Physical sciences
License unknown
Tool
MEGAHIT tool
Assemble metagenomic sequencing reads de novo.
Added Change observed by
GitHub · voutcn/megahitStars 727Forks 145
Biological sciences
License unknown
Tool
Mesa tool
Build agent-based models across research fields in Python, collect simulation data and add optional browser visualizations.
Added Change observed by
GitHub · mesa/mesaStars 3.9KForks 1.3K
Computer and information sciences
Catalog snapshot 2026-09-22. Date ranges use UTC. Filters use the captured page time; results can change with a new catalog snapshot. Research stays at its original source.