License unknown
Tool
Trinity tool
Reconstruct transcript sequences de novo from RNA-seq reads.
Added Change observed by
GitHub · trinityrnaseq/trinityrnaseqStars 901Forks 317
Biological sciences
AIPOCH Network
Reusable capabilities
Tools, methods, and workflows to bring into your own research.
227 entries · Capabilities
License unknown
Tool
tskit tool
Store, manipulate and analyze genetic tree sequences and related ancestry representations.
Added Change observed by
GitHub · tskit-dev/tskitStars 191Forks 84
Biological sciences
License unknown
Tool
Unicycler tool
Assemble bacterial isolate genomes from short reads and optional long reads.
Added Change observed by
GitHub · rrwick/UnicyclerStars 653Forks 139
Biological sciences
License unknown
Tool
UrbanAccess tool
Integrate transit and pedestrian networks from GTFS and OpenStreetMap data for accessibility analysis.
Added Change observed by
GitHub · UDST/urbanaccessStars 266Forks 62
Social and economic geography
License unknown
Tool
vegan tool
Analyze community ecology with ordination, diversity measures and null models.
Added Change observed by
GitHub · vegandevs/veganStars 544Forks 113
Biological sciences
License unknown
Tool
Voyant Tools tool
Read and analyze text corpora through browser-based frequency, distribution and visualization tools for digital-humanities research. Public hosting terms are separate from the software license.
Added Change observed by
GitHub · voyanttools/VoyantStars 136Forks 13
Languages and literature
License unknown
Tool
WarpX tool
Simulate electromagnetic or electrostatic particle-in-cell evolution for plasmas and particle beams.
Added Change observed by
GitHub · BLAST-WarpX/warpxStars 484Forks 280
Physical sciences
License unknown
Tool
WeightIt tool
Estimate balancing or censoring weights and support weighted analyses of point or longitudinal treatments.
Added Change observed by
GitHub · ngreifer/WeightItStars 133Forks 21
Mathematics
Catalog snapshot 2026-09-22. Date ranges use UTC. Filters use the captured page time; results can change with a new catalog snapshot. Research stays at its original source.