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Capability

HISAT2 tool

Align DNA and RNA sequencing reads using graph-based reference indexes.

Community indexedBiological sciences

Capability details

What this helps you do

Align DNA and RNA sequencing reads using graph-based reference indexes.

Catalog editorial description

View description sources

editor · 2026-09-19 — Catalog classification and summary; not maintainer acknowledgement.

Research classification

Biological sciences

View discipline evidence

editor · 2026-09-19 — Core research task classification from pinned primary documentation. 1.6 生物科学:依据固定上游用途及所列官方补充材料作出的策展判断。项目和核心工具均限于上述用途,跨领域框架不强制收窄。

Who it is for

An intended audience has not been supplied. Check the original documentation for suitability and prerequisites.

How to use it

Follow upstream guidance and source conditions.

AIPOCH has not verified execution.

Read usage documentation

Inputs

  • DNA/RNA reads及参考

Outputs

  • 图索引支持的比对

Resource type

Tool

Execution guidance

community described

Read execution guidance

Access conditions

  • GPL-3
  • third_party组件另有条件;未验证特定基因组准确性。
  • Community indexing of core software only. External components, models, datasets and services have separate terms. Installation, scientific accuracy and suitability were not validated.
View usage information sources

Inputs

editor · 2026-09-19 — Catalog classification and summary; not maintainer acknowledgement.

Outputs

editor · 2026-09-19 — Catalog classification and summary; not maintainer acknowledgement.

Access conditions

editor · 2026-09-19 — Catalog classification and summary; not maintainer acknowledgement.

Documentation

editor · 2026-09-19 — Catalog classification and summary; not maintainer acknowledgement.

Sources & versions

DaehwanKimLab/hisat2
Reference role
implementation
Last successful public check
2026-09-22T08:38:18.509Z
Latest public check attempt
2026-09-22T08:38:18.509Z · ok
GitHub metrics
Stars 541 · checked · latest attempt 2026-09-22T08:38:18.509Z (ok)
Forks 131 · checked · latest attempt 2026-09-22T08:38:18.509Z (ok)
Latest default-branch commit
Unknown
Source activity check
missing · last successful check unknown · latest attempt 2026-09-22T08:38:18.509Z (unavailable)
Source status
Active at last observation
License
GPL-3.0
Fixed commit
0d244324f98de541bce04d45c75e83bc3522f7f4
Reference checked
2026-09-19
Download source at this commit

Default-branch activity is separate from the fixed reference above. Source terms apply. A fixed commit identifies content; it does not establish scientific validity.

Related research

HISAT2Community indexed

Align DNA and RNA sequencing reads using graph-based reference indexes.

Research discipline Biological sciencesReusable outputs 1
Biological sciencesDaehwanKimLab/hisat2
Added Change observed by
GitHub · DaehwanKimLab/hisat2Stars 541Forks 131

Claims & evidence

No maintainer acknowledgement or scientific validation is recorded for this entry. Community indexing only describes its inclusion in this catalog.

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Research questions and code contributions belong with the original project. Catalog corrections can be proposed separately.

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