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samtools

@samtools

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github · 2026-09-22

Sources & versions

samtools/htslib
Reference role
primary
Last successful public check
2026-09-22T08:38:15.906Z
Latest public check attempt
2026-09-22T08:38:15.906Z · ok
GitHub metrics
Stars 951 · checked · latest attempt 2026-09-22T08:38:15.906Z (ok)
Forks 475 · checked · latest attempt 2026-09-22T08:38:15.906Z (ok)
Latest default-branch commit
Unknown
Source activity check
missing · last successful check unknown · latest attempt 2026-09-22T08:38:15.906Z (unavailable)
Source status
Active at last observation
License
Unknown — check the source terms
Fixed commit
Not available

Default-branch activity is separate from the fixed reference above. Source terms apply. A fixed commit identifies content; it does not establish scientific validity.

samtools/samtools
Reference role
primary
Last successful public check
2026-09-22T08:38:16.092Z
Latest public check attempt
2026-09-22T08:38:16.092Z · ok
GitHub metrics
Stars 1,959 · checked · latest attempt 2026-09-22T08:38:16.092Z (ok)
Forks 620 · checked · latest attempt 2026-09-22T08:38:16.092Z (ok)
Latest default-branch commit
Unknown
Source activity check
missing · last successful check unknown · latest attempt 2026-09-22T08:38:16.092Z (unavailable)
Source status
Active at last observation
License
Unknown — check the source terms
Fixed commit
Not available

Default-branch activity is separate from the fixed reference above. Source terms apply. A fixed commit identifies content; it does not establish scientific validity.

samtools/bcftools
Reference role
primary
Last successful public check
2026-09-22T08:38:16.263Z
Latest public check attempt
2026-09-22T08:38:16.263Z · ok
GitHub metrics
Stars 894 · checked · latest attempt 2026-09-22T08:38:16.263Z (ok)
Forks 277 · checked · latest attempt 2026-09-22T08:38:16.263Z (ok)
Latest default-branch commit
Unknown
Source activity check
missing · last successful check unknown · latest attempt 2026-09-22T08:38:16.263Z (unavailable)
Source status
Active at last observation
License
Unknown — check the source terms
Fixed commit
Not available

Default-branch activity is separate from the fixed reference above. Source terms apply. A fixed commit identifies content; it does not establish scientific validity.

Related research

License unknown

Tool

BCFtools tool

Call variants and manipulate VCF and BCF files, with licensing conditions that depend on optional build components.

Added Change observed by
GitHub · samtools/bcftoolsStars 894Forks 277
Biological sciences
License unknown

Tool

HTSlib tool

Read and write high-throughput sequencing formats through a shared C library.

Added Change observed by
GitHub · samtools/htslibStars 951Forks 475
Biological sciences
License unknown

Tool

SAMtools tool

Sort, convert, index and summarize sequencing alignment files.

Added Change observed by
GitHub · samtools/samtoolsStars 2KForks 620
Biological sciences
BCFtoolsCommunity indexed

Call variants and manipulate VCF and BCF files, with licensing conditions that depend on optional build components.

Research discipline Biological sciencesReusable outputs 1
Biological sciencessamtools/bcftools
Added Change observed by
GitHub · samtools/bcftoolsStars 894Forks 277
HTSlibCommunity indexed

Read and write high-throughput sequencing formats through a shared C library.

Research discipline Biological sciencesReusable outputs 1
Biological sciencessamtools/htslib
Added Change observed by
GitHub · samtools/htslibStars 951Forks 475
SAMtoolsCommunity indexed

Sort, convert, index and summarize sequencing alignment files.

Research discipline Biological sciencesReusable outputs 1
Biological sciencessamtools/samtools
Added Change observed by
GitHub · samtools/samtoolsStars 2KForks 620

Claims & evidence

No maintainer acknowledgement or scientific validation is recorded for this entry. Community indexing only describes its inclusion in this catalog.

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