Capability details
What this helps you do
Organize, subset and save a data matrix together with aligned observation and variable annotations using AnnData.
Catalog editorial description
View description sources
editor · 2026-09-22 — description: editorial summary of public documentation. Rolling stable documentation, 0.13.3.post0 header; not a pinned implementation guarantee. Not execution or scientific validation.
Research classification
Computer and information sciences
Single-cell analysis · Bioinformatics · Data analysis
View discipline evidence
editor · 2026-09-16 — 按生物信息数据表示及管理用途归 1.2；当前通用容器描述不充分支持将其自身当作细胞生物学研究，暂不加 1.6。
View research tag evidence
editor · 2026-09-16 — Editorial method/task/topic tags for this entry; not a discipline or a maintainer endorsement.
Who it is for
- Python researchers managing matrix-shaped data, including cell-by-gene measurements.
How to use it
- Create an AnnData object from a matrix.
- Add aligned annotations, then subset and save using the tutorial.
AIPOCH has not verified execution.
Read usage documentationInputs
- A dense or sparse observation-by-variable matrix and aligned metadata.
Outputs
- AnnData objects, annotated subsets, and saved h5ad or Zarr data.
Resource type
Tool
Execution guidance
Follow the upstream documentation. Execution has not been verified by AIPOCH.
Access conditions
- Keep annotations aligned with matrix axes; review views and copies before modifying subsets.
View usage information sources
Who it is for
editor · 2026-09-22 — audience: editorial summary of public documentation. Rolling stable documentation, 0.13.3.post0 header; not a pinned implementation guarantee. Not execution or scientific validation.
How to use it
editor · 2026-09-22 — getting_started: editorial summary of public documentation. Rolling stable documentation, 0.13.3.post0 header; not a pinned implementation guarantee. Not execution or scientific validation.
Inputs
editor · 2026-09-22 — inputs: editorial summary of public documentation. Rolling stable documentation, 0.13.3.post0 header; not a pinned implementation guarantee. Not execution or scientific validation.
Outputs
editor · 2026-09-22 — outputs: editorial summary of public documentation. Rolling stable documentation, 0.13.3.post0 header; not a pinned implementation guarantee. Not execution or scientific validation.
Access conditions
editor · 2026-09-22 — conditions: editorial summary of public documentation. Rolling stable documentation, 0.13.3.post0 header; not a pinned implementation guarantee. Not execution or scientific validation.
Documentation
editor · 2026-09-22 — documentation_url: editorial summary of public documentation. Rolling stable documentation, 0.13.3.post0 header; not a pinned implementation guarantee. Not execution or scientific validation.
Sources & versions
- Reference role
- primary
- Last successful public check
- 2026-09-22T08:37:54.533Z
- Latest public check attempt
- 2026-09-22T08:37:54.533Z · ok
- GitHub metrics
- Stars 773 · checked · latest attempt 2026-09-22T08:37:54.533Z (ok)
Forks 209 · checked · latest attempt 2026-09-22T08:37:54.533Z (ok) - Latest default-branch commit
13b1ae164e7c8fdf69e1d195a49bc7c3774424d9
Observed 2026-09-22T08:37:54.533Z- Source activity check
- fresh · last successful check 2026-09-22T08:37:54.533Z · latest attempt 2026-09-22T08:37:54.533Z (ok)
- Source status
- Active at last observation
- License
- BSD-3-Clause
- Fixed commit
13b1ae164e7c8fdf69e1d195a49bc7c3774424d9- Reference checked
- 2026-09-22
Default-branch activity is separate from the fixed reference above. Source terms apply. A fixed commit identifies content; it does not establish scientific validity.
Related research
AnnData provides a Python data container for annotated matrices, keeping observations, variables and associated metadata together for downstream research workflows.
Single-cell analysis software. This catalog connects the Scanpy implementation with the AnnData data model that its README identifies as jointly developed infrastructure.
Incoming relationship: uses · Scanpy research software
github evidence · 2026-09-12 — Scanpy README states that the toolkit is built jointly with AnnData. This is a software relationship, not scientific validation.
Claims & evidence
Continue the conversation
Research questions and code contributions belong with the original project. Catalog corrections can be proposed separately.