886 entries · All types

SalmonCommunity indexed

Estimate transcript abundance from RNA-seq reads; the current Rust rewrite requires rebuilt indexes.

Research discipline Biological sciencesReusable outputs 1
Biological sciencesCOMBINE-lab/salmon
Added Change observed by
GitHub · COMBINE-lab/salmonStars 932Forks 189
License unknown

Tool

Salmon tool

Estimate transcript abundance from RNA-seq reads; the current Rust rewrite requires rebuilt indexes.

Added Change observed by
GitHub · COMBINE-lab/salmonStars 932Forks 189
Biological sciences
SACommunity indexed

samtools

@samtools

Public GitHub organization represented by selected research sources.

Added Change observed by
GitHub · @samtoolsPublic followers 356Checked 2026-09-21
3 sources · 3 capabilities
SAMtoolsCommunity indexed

Sort, convert, index and summarize sequencing alignment files.

Research discipline Biological sciencesReusable outputs 1
Biological sciencessamtools/samtools
Added Change observed by
GitHub · samtools/samtoolsStars 2KForks 620
License unknown

Tool

SAMtools tool

Sort, convert, index and summarize sequencing alignment files.

Added Change observed by
GitHub · samtools/samtoolsStars 2KForks 620
Biological sciences

GitHub source

samtools/bcftools

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

Added Change observed by
GitHub · samtools/bcftoolsStars 894Forks 277

GitHub source

samtools/htslib

C library for high-throughput sequencing data formats

Added Change observed by
GitHub · samtools/htslibStars 951Forks 475

GitHub source

samtools/samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

Added Change observed by
GitHub · samtools/samtoolsStars 2KForks 620

Catalog snapshot 2026-09-22. Date ranges use UTC. Filters use the captured page time; results can change with a new catalog snapshot. Research stays at its original source.

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